PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111067.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 419aa    MW: 46032.9 Da    PI: 8.465
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111067.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-114975127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  XP_010111067.1 49 PGEPDCSYYIRTGLCRFGATCRFNHPP 75
                    5789*********************97 PP

2zf-CCCH30.75.3e-108099827
                    GGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                    ++++tGtCk+G++CkF+H++
  XP_010111067.1 80 YYLKTGTCKFGATCKFHHPR 99
                    8*****************96 PP

3zf-CCCH35.22.1e-11123145527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C +++rtG+Ck+G++CkF+H++
  XP_010111067.1 123 ECAYYLRTGQCKFGSTCKFHHPQ 145
                     6********************97 PP

4zf-CCCH37.93e-12280305227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ CkF+H++
  XP_010111067.1 280 GQPECQFYMKTGDCKFGAVCKFHHPR 305
                     5799********************96 PP

5zf-CCCH40.25.5e-13325351127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_010111067.1 325 PGEPLCIFYSRYGICKFGPSCKFDHPM 351
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5874876IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-54875IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-55376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-45474IPR000571Zinc finger, CCCH-type
SMARTSM003560.0327699IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-88099IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-48099IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.49380100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197118146IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5118145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6119146IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9123145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4124144IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183278306IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-9280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6282308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5284306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709324352IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7324351IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10326351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4329349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEFDAGIPMS LAAVTELREL SPSFSQDAIW QMNLRSSETM ESGTYPERPG EPDCSYYIRT  60
GLCRFGATCR FNHPPNRKLY YLKTGTCKFG ATCKFHHPRD KAGIAGRVSL NILGYPLRPN  120
EMECAYYLRT GQCKFGSTCK FHHPQPTNMM VSMRGSPVYP TVQSPTTPGQ QSYIGGITNW  180
SRASFIPSPR WQGSSSYAPM ILPQGVVSVP GWNTYSGQLG SVSSPERQQP SGSSQIYGTS  240
RQSDPANTGS QGTLSPYRSG SIPVGFYALQ RENVFPERTG QPECQFYMKT GDCKFGAVCK  300
FHHPRERLIP APDCLLSPMG LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGIFTINLSA  360
TSSTDTPVRR LLGSSSGTTA LNLSSEGLVE AGSTNPRRLS LSETRQMPSG DDNNTDTED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111067.10.0Zinc finger CCCH domain-containing protein ZFN-like protein
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLW9SVH00.0W9SVH0_9R
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-170zinc finger protein 1